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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytCN-acetylmuramoyl-L-alanine amidase LytC precursor. (438 aa)    
Predicted Functional Partners:
yaaH_1
Spore germination protein YaaH.
  
 
 0.890
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
0.834
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
0.831
yabG
Sporulation-specific protease YabG.
       0.816
murAA_1
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
   
 0.621
OPJ54800.1
Hypothetical protein.
  
    0.619
OPJ54801.1
LysM domain protein.
 
 
 0.618
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
      
 0.616
spoVD_1
Stage V sporulation protein D.
 
 
 0.614
mepM_2
Murein DD-endopeptidase MepM.
 
   
 0.603
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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