STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54801.1LysM domain protein. (517 aa)    
Predicted Functional Partners:
OPJ55070.1
Hypothetical protein.
  
 
 
 0.874
OPJ56943.1
SpoIIIAH-like protein.
  
    0.777
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.768
OPJ55237.1
Hypothetical protein.
  
     0.764
aprX
Serine protease AprX; Belongs to the peptidase S8 family.
  
  
 0.755
OPJ56765.1
Hypothetical protein.
  
    0.754
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.753
OPJ55090.1
Spore cortex protein YabQ.
  
     0.740
ssbA_1
Single-stranded DNA-binding protein A.
  
     0.736
OPJ54808.1
Stage II sporulation protein SpoIIR.
 
     0.736
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.