Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gerBA_3Spore germination protein B1. (509 aa)    
Predicted Functional Partners:
gerAC
Spore germination protein A3 precursor.
 
  
 0.954
yndE
Spore germination protein YndE.
 
  
 0.953
OPJ54808.1
Stage II sporulation protein SpoIIR.
 
    0.905
ypeB
Sporulation protein YpeB.
 
     0.847
gerBC
Spore germination protein B3 precursor.
 
  
 0.799
spoVAD
Stage V sporulation protein AD.
  
  
 0.782
OPJ54804.1
Hypothetical protein.
       0.778
OPJ56725.1
SpoVA protein.
  
  
 0.776
OPJ56727.1
SpoVA protein.
  
  
 0.773
spoIVB
SpoIVB peptidase precursor.
  
     0.771
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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