Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yndESpore germination protein YndE. (366 aa)    
Predicted Functional Partners:
gerAC
Spore germination protein A3 precursor.
 
  
 0.954
gerBA_3
Spore germination protein B1.
 
  
 0.953
OPJ54808.1
Stage II sporulation protein SpoIIR.
 
   
 0.892
ypeB
Sporulation protein YpeB.
 
   
 0.871
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.784
OPJ54804.1
Hypothetical protein.
       0.778
gerBC
Spore germination protein B3 precursor.
 
  
 0.774
gerBA_2
Spore germination protein B1.
 
  
 0.753
mcbR
HTH-type transcriptional regulator McbR.
       0.697
sleB_3
Spore cortex-lytic enzyme precursor.
 
  
 0.686
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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