STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sleB_3Spore cortex-lytic enzyme precursor. (228 aa)    
Predicted Functional Partners:
ypeB
Sporulation protein YpeB.
 
  
 0.965
OPJ54808.1
Stage II sporulation protein SpoIIR.
 
   
 0.811
gerAC
Spore germination protein A3 precursor.
 
    0.746
gerBA_3
Spore germination protein B1.
 
   
 0.730
yndE
Spore germination protein YndE.
 
  
 0.683
gerBC
Spore germination protein B3 precursor.
  
    0.660
ytfJ
Putative spore protein YtfJ.
  
    0.587
OPJ54804.1
Hypothetical protein.
       0.556
spoVAD
Stage V sporulation protein AD.
  
  
 0.547
OPJ56725.1
SpoVA protein.
  
  
 0.528
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.