scpA_2 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scpA_2

methylmalonyl-CoA mutase. (558 aa)

Predicted Functional Partners:

scpA_3

0.999

argK

0.994

gloA_2

0.985

nifJ

0.966

accB

0.920

cfiB

0.790

korB_1

0.789

pckA

0.789

OPJ54823.1

0.772

korA_1

0.761

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ54823.1	accB	CLOTH_19420	CLOTH_04800	methylmalonyl-CoA carboxyltransferase 12S subunit.	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.934
OPJ54823.1	argK	CLOTH_19420	CLOTH_19400	methylmalonyl-CoA carboxyltransferase 12S subunit.	Putative GTPase ArgK.	0.845
OPJ54823.1	cfiB	CLOTH_19420	CLOTH_05770	methylmalonyl-CoA carboxyltransferase 12S subunit.	2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.947
OPJ54823.1	gloA_2	CLOTH_19420	CLOTH_19410	methylmalonyl-CoA carboxyltransferase 12S subunit.	Lactoylglutathione lyase.	0.989
OPJ54823.1	korA_1	CLOTH_19420	CLOTH_04900	methylmalonyl-CoA carboxyltransferase 12S subunit.	2-oxoglutarate oxidoreductase subunit KorA.	0.557
OPJ54823.1	korB_1	CLOTH_19420	CLOTH_04890	methylmalonyl-CoA carboxyltransferase 12S subunit.	2-oxoglutarate oxidoreductase subunit KorB.	0.556
OPJ54823.1	nifJ	CLOTH_19420	CLOTH_01250	methylmalonyl-CoA carboxyltransferase 12S subunit.	Pyruvate-flavodoxin oxidoreductase.	0.964
OPJ54823.1	scpA_2	CLOTH_19420	CLOTH_19380	methylmalonyl-CoA carboxyltransferase 12S subunit.	methylmalonyl-CoA mutase.	0.772
OPJ54823.1	scpA_3	CLOTH_19420	CLOTH_19390	methylmalonyl-CoA carboxyltransferase 12S subunit.	methylmalonyl-CoA mutase.	0.777
accB	OPJ54823.1	CLOTH_04800	CLOTH_19420	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	methylmalonyl-CoA carboxyltransferase 12S subunit.	0.934
accB	argK	CLOTH_04800	CLOTH_19400	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Putative GTPase ArgK.	0.410
accB	cfiB	CLOTH_04800	CLOTH_05770	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.924
accB	gloA_2	CLOTH_04800	CLOTH_19410	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Lactoylglutathione lyase.	0.750
accB	korA_1	CLOTH_04800	CLOTH_04900	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	2-oxoglutarate oxidoreductase subunit KorA.	0.855
accB	korB_1	CLOTH_04800	CLOTH_04890	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	2-oxoglutarate oxidoreductase subunit KorB.	0.856
accB	nifJ	CLOTH_04800	CLOTH_01250	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Pyruvate-flavodoxin oxidoreductase.	0.978
accB	pckA	CLOTH_04800	CLOTH_07490	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Phosphoenolpyruvate carboxykinase; Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	0.925
accB	scpA_2	CLOTH_04800	CLOTH_19380	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	methylmalonyl-CoA mutase.	0.920
accB	scpA_3	CLOTH_04800	CLOTH_19390	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	methylmalonyl-CoA mutase.	0.921
argK	OPJ54823.1	CLOTH_19400	CLOTH_19420	Putative GTPase ArgK.	methylmalonyl-CoA carboxyltransferase 12S subunit.	0.845