Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
argKPutative GTPase ArgK. (312 aa)    
Predicted Functional Partners:
scpA_2
methylmalonyl-CoA mutase.
 0.999
scpA_3
methylmalonyl-CoA mutase.
 0.998
gloA_2
Lactoylglutathione lyase.
  
  0.980
OPJ54823.1
methylmalonyl-CoA carboxyltransferase 12S subunit.
 
   
 0.864
gcdC
glutaconyl-CoA decarboxylase subunit gamma.
       0.741
oadG
Oxaloacetate decarboxylase gamma chain.
       0.727
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.644
gcdB
glutaconyl-CoA decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
       0.632
OPJ54828.1
Peptidase family S58.
       0.436
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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