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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54733.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
epsE
Type II secretion system protein E.
  
 0.887
epsF
Type II secretion system protein F.
  
  
 0.799
tnsC
Transposon Tn7 transposition protein TnsC.
  
     0.632
tnsB
Transposon Tn7 transposition protein TnsB.
  
     0.627
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
  
 0.616
OPJ57303.1
Hypothetical protein.
 
  
 0.603
OPJ54763.1
Hypothetical protein.
  
     0.577
tnsA
Transposon Tn7 transposition protein TnsA.
  
     0.573
OPJ56332.1
Putative major pilin subunit.
 
 
 0.542
comEA
ComE operon protein 1.
  
  
 0.505
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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