Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I restriction enzyme; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1043 aa)    
Predicted Functional Partners:
OPJ54747.1
Putative type I restriction enzymeP M protein.
 
  
 0.987
OPJ54749.1
EcoKI restriction-modification system protein HsdS.
 
  
 0.985
OPJ54752.1
WLM domain protein.
 
   
 0.952
OPJ57178.1
Type IIS restriction enzyme Eco57I.
 
  
 0.801
OPJ54750.1
Hypothetical protein.
       0.686
OPJ54748.1
Hypothetical protein.
       0.650
OPJ54739.1
Type III restriction enzyme, res subunit.
  
  
 0.589
malF
Maltose transport system permease protein MalF.
    
  0.402
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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