Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54763.1Hypothetical protein. (627 aa)    
Predicted Functional Partners:
tnsC
Transposon Tn7 transposition protein TnsC.
 
 
   0.991
tnsA
Transposon Tn7 transposition protein TnsA.
 
   
 0.967
tnsB
Transposon Tn7 transposition protein TnsB.
 
     0.952
OPJ54759.1
Hypothetical protein.
       0.773
OPJ54733.1
Hypothetical protein.
  
     0.577
OPJ54758.1
Hypothetical protein.
       0.510
OPJ55908.1
Hypothetical protein.
  
     0.439
OPJ57013.1
Putative amidase domain protein.
  
     0.402
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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