STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
buk2_1Butyrate kinase 2; Belongs to the acetokinase family. (361 aa)    
Predicted Functional Partners:
pta_2
Phosphate acetyltransferase.
 
 0.995
pta_1
Phosphate acetyltransferase.
 
 0.961
buk2_2
Butyrate kinase 2; Belongs to the acetokinase family.
 
  
 
0.802
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.724
OPJ54685.1
Hypothetical protein.
       0.683
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.614
gdh
NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.614
ctfA
Butyrate--acetoacetate CoA-transferase subunit A.
     
 0.612
puuR
HTH-type transcriptional regulator PuuR.
     
  0.589
ctfB
Butyrate--acetoacetate CoA-transferase subunit B.
     
 0.548
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.