Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54685.1Hypothetical protein. (225 aa)    
Predicted Functional Partners:
ndhI_4
NAD(P)H-quinone oxidoreductase subunit I.
 
     0.924
porC_2
Pyruvate synthase subunit PorC.
 
     0.902
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
 
   
 0.851
korA_2
2-oxoglutarate oxidoreductase subunit KorA.
 
     0.845
buk2_2
Butyrate kinase 2; Belongs to the acetokinase family.
       0.785
dpnA
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.728
parB_1
Putative chromosome-partitioning protein ParB; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.728
pta_2
Phosphate acetyltransferase.
       0.688
buk2_1
Butyrate kinase 2; Belongs to the acetokinase family.
       0.683
parB_2
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
  
 
 0.677
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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