STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54642.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
OPJ56074.1
Hypothetical protein.
  
     0.748
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
     0.723
OPJ56757.1
Hypothetical protein.
  
     0.720
pepN
Aminopeptidase N.
  
     0.708
OPJ54937.1
Hypothetical protein.
  
     0.698
OPJ55257.1
Hypothetical protein.
  
     0.652
yndE
Spore germination protein YndE.
  
     0.649
OPJ54641.1
sigmaK-factor processing regulatory protein BofA.
       0.625
OPJ56739.1
Hypothetical protein.
  
     0.597
OPJ56765.1
Hypothetical protein.
  
     0.590
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.