Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_00510Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)    
Predicted Functional Partners:
IO98_05715
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.892
IO98_00515
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.785
IO98_02185
4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.752
IO98_19860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.723
IO98_19900
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.723
IO98_11240
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.696
IO98_20915
Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.647
IO98_03845
Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.637
IO98_18310
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.620
IO98_00505
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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