Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_014754-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family. (335 aa)    
Predicted Functional Partners:
serC
MFS transporter; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
     
 0.934
IO98_04285
Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.861
IO98_01490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
IO98_01485
Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.786
IO98_07685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.784
IO98_19580
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
IO98_01500
Asp/Glu racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.738
IO98_01480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.715
IO98_01495
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.649
IO98_01515
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.604
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.