STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO98_020654-vinyl reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)    
Predicted Functional Partners:
IO98_05550
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.882
IO98_02070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.823
IO98_14080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.818
IO98_14195
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.818
IO98_20920
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.818
IO98_18870
phosphate:AMP phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.698
IO98_23065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.576
IO98_02075
Adenine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
IO98_02080
DNA adenine methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
IO98_21640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.