Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IO98_02480ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)    
Predicted Functional Partners:
IO98_02475
Teichoic acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
IO98_02490
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.910
IO98_02485
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.892
IO98_02680
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.742
IO98_18255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
IO98_02495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
IO98_04255
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.608
IO98_12145
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.608
IO98_18260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.608
IO98_01100
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.555
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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