Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_03085Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
IO98_18955
Aldehyde oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.988
IO98_03095
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
IO98_03090
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.981
IO98_18465
gltD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.861
IO98_02775
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.851
IO98_16750
Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.842
IO98_03550
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.840
IO98_21230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.826
IO98_23185
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.825
IO98_12735
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.812
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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