Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_03370Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)    
Predicted Functional Partners:
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.854
IO98_04905
Trehalose-6-phosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_11155
Oligo-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_18890
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_18925
Glucan 1,6-alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_19915
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_20175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_04215
Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.593
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 0.560
IO98_17405
Hypothetical protein; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
  
 
 
 0.480
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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