Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
IO98_03400ATP-dependent OLD family endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)    
Predicted Functional Partners:
IO98_11680
Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
IO98_08060
Molecular chaperone GroEL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
IO98_19705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
IO98_03765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
IO98_03390
Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
IO98_23155
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
IO98_20120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
IO98_02735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
IO98_17875
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
IO98_14625
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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