Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IO98_03420Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.900
IO98_03425
Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.895
IO98_00540
Pentose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
 
  
 0.746
xylB-2
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.746
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
    0.742
IO98_18660
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.682
IO98_20675
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.636
IO98_03570
Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.550
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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