Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_03430Abortive phage infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)    
Predicted Functional Partners:
IO98_12205
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
IO98_04040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.562
IO98_15620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.562
IO98_20775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
IO98_07805
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
IO98_22945
Choloylglycine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
IO98_13760
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.546
IO98_12195
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
IO98_16325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
IO98_04550
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.467
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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