Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_03475Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
IO98_03480
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.968
IO98_03470
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.943
IO98_20835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.837
IO98_11770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.836
IO98_06330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.823
IO98_05445
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.804
IO98_11775
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.804
IO98_16305
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.804
IO98_20840
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.804
IO98_17965
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.803
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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