STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO98_03625ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
IO98_03620
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.962
IO98_09045
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.859
IO98_11310
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.859
IO98_15345
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.859
IO98_06485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.858
IO98_17690
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.858
IO98_20605
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.856
IO98_18220
Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.852
IO98_03520
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.849
IO98_19500
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.845
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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