Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_04415Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
IO98_15200
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.820
IO98_04410
Uridine phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
IO98_04420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
IO98_10025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
IO98_04915
Trehalose operon transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
IO98_09290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
IO98_14580
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
IO98_04425
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.553
IO98_21220
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
IO98_10320
Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.530
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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