Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_04490Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
IO98_02550
Choline kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
IO98_03890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.831
IO98_02680
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.815
IO98_02490
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.797
IO98_04485
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.771
IO98_01715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.718
IO98_18315
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
IO98_02555
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
IO98_12570
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
IO98_03115
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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