Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_04495Carnitine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family. (512 aa)    
Predicted Functional Partners:
IO98_02550
Choline kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.719
IO98_01015
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.558
IO98_18315
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
IO98_22515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
IO98_12570
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
IO98_01715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
IO98_04500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
IO98_02555
Cell wall-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
IO98_17730
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.480
msrB
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.473
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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