Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_04545ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)    
Predicted Functional Partners:
IO98_04550
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
IO98_13760
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.686
IO98_05070
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.672
IO98_18255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.671
IO98_12145
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.638
IO98_04255
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.627
IO98_18260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.623
IO98_01100
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.555
IO98_04540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
IO98_07815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.470
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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