Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IO98_05085Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)    
Predicted Functional Partners:
IO98_05090
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.961
IO98_05080
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.956
IO98_05100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.928
IO98_05095
Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.925
IO98_19420
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
 
  
  0.902
guaB
Inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.843
IO98_05115
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.838
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.818
IO98_05155
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.664
IO98_05165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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