Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_06010Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (390 aa)    
Predicted Functional Partners:
IO98_12625
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.940
IO98_12620
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.938
IO98_06015
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.927
IO98_12615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.912
IO98_05970
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.877
IO98_05975
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.875
IO98_16815
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.843
IO98_12610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.817
IO98_14605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.817
IO98_16825
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.775
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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