Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_06110GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)    
Predicted Functional Partners:
IO98_13665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.690
IO98_01770
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.673
IO98_04005
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.672
IO98_08085
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.665
IO98_09210
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.656
IO98_10025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.594
IO98_01575
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.591
IO98_09290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.579
IO98_06105
Cys/Met metabolism pyridoxal-phosphate-dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
IO98_04915
Trehalose operon transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.556
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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