STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO98_08050GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)    
Predicted Functional Partners:
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.817
IO98_00155
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.690
IO98_12035
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.664
IO98_07340
Butanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.622
IO98_12070
Butanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.622
ku
DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
     0.615
IO98_08045
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.592
IO98_03240
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.433
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.