Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_08060Molecular chaperone GroEL; Derived by automated computational analysis using gene prediction method: Protein Homology. (48 aa)    
Predicted Functional Partners:
IO98_20630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
IO98_19705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
IO98_03400
ATP-dependent OLD family endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
IO98_12075
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
IO98_13915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
IO98_11680
Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
IO98_20175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
IO98_10385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
IO98_08685
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
IO98_03765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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