Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_08615Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
IO98_08620
Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.872
IO98_08625
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.857
IO98_08635
Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
metN
Hypothetical protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.543
metN-2
ABC transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.543
IO98_07025
NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.533
IO98_19840
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.488
IO98_10095
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.
  
 
 0.481
IO98_10100
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.434
IO98_19835
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.434
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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