Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
IO98_09040ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
IO98_09045
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.947
IO98_09050
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.934
IO98_11725
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
   
 0.896
IO98_21575
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
   
 0.896
IO98_09055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.866
IO98_18910
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.833
IO98_03625
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.699
IO98_18920
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.692
IO98_03620
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.654
IO98_11170
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.651
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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