Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
IO98_09205YhcH/YjgK/YiaL family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)    
Predicted Functional Partners:
IO98_09240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
IO98_09195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.754
IO98_09200
2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.743
IO98_09190
Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.727
IO98_03250
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.576
IO98_06390
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.576
IO98_08705
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
   
 0.576
IO98_15090
Glycosyl hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
   
 0.576
IO98_20595
Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
   
 0.576
IO98_09185
Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.514
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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