Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IO98_10550Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)    
Predicted Functional Partners:
IO98_10545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.956
IO98_10540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
IO98_09665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.940
ribBA
GTP cyclohydrolase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.912
IO98_19620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.903
IO98_20985
Signal protein PDZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.854
IO98_09400
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.844
IO98_18745
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.830
IO98_19880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.829
IO98_00820
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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