STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO98_11305Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
IO98_11725
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 0.980
IO98_11310
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.971
IO98_03620
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.938
IO98_17690
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.938
IO98_02170
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.933
IO98_21575
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 0.924
IO98_22715
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.893
IO98_15345
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.865
IO98_03520
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.858
IO98_06485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.858
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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