Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_12985Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (328 aa)    
Predicted Functional Partners:
rbsA-2
Hypothetical protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  0.960
IO98_12990
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.948
IO98_12975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.936
IO98_14760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.898
IO98_10170
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.890
IO98_13725
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.880
IO98_14455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.874
IO98_10860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.873
IO98_14745
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.873
rbsA-3
D-ribose transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  0.864
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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