Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IO98_13745Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
IO98_13740
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.907
IO98_09265
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
IO98_10615
RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.464
IO98_19515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
IO98_13750
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
IO98_13735
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
IO98_00610
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
IO98_13760
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.434
IO98_19510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
IO98_07290
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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