Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_16005Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
IO98_16000
Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.962
IO98_15995
SpoVA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.810
IO98_11135
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
IO98_18575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
IO98_00670
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
IO98_14625
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
IO98_02735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
IO98_02850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
IO98_03765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
IO98_16025
Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.
 
     0.726
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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