Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO98_19005Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (674 aa)    
Predicted Functional Partners:
IO98_03250
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.904
IO98_13510
Aldose epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.829
araA
Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
  0.828
IO98_23135
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.813
IO98_06390
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.710
IO98_08705
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.701
IO98_19020
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.696
IO98_22725
Glucosylceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.
  
 0.680
IO98_20595
Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.657
IO98_18210
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.646
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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