Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
IO98_19715Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)    
Predicted Functional Partners:
IO98_19240
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.851
IO98_06580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.805
IO98_18975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.801
IO98_05550
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.799
IO98_19345
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.683
cheD
Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
  
  0.659
cheB
Chemotaxis protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
  
  0.607
IO98_13000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.552
IO98_19340
Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.546
IO98_23640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.537
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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