STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO98_20040BMC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)    
Predicted Functional Partners:
IO98_16210
Ethanolamine utilization protein EutN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.891
IO98_13140
Ethanolamine utilization protein EutN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.888
IO98_20090
Ethanolamine utilization protein EutN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.868
IO98_20030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
IO98_20025
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.756
IO98_20015
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.751
IO98_20035
Microcompartment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.749
IO98_20020
Carboxysome structural protein EutM; Ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.690
IO98_20080
Ethanolamine utilization protein EutJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.463
IO98_13110
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.416
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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