Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
IO98_20060Microcompartment protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)    
Predicted Functional Partners:
IO98_20065
EutP/PduV family GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the EutP/PduV family.
 
  
 0.957
IO98_20080
Ethanolamine utilization protein EutJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.933
IO98_20075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.884
IO98_20095
Ethanolamine utilization protein EutQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.863
IO98_16280
Ethanolamine utilization protein EutP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the EutP/PduV family.
 
  
 0.827
IO98_20090
Ethanolamine utilization protein EutN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.787
cutD
Glycyl radical-activating protein; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
 
     0.786
IO98_16245
Carboxysome structural protein involved in ethanolamine utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.785
IO98_16260
Ethanolamine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.779
IO98_16200
Ethanolamine utilization protein EutQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.764
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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