Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO98_20175Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
IO98_00485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
IO98_16900
PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
IO98_21370
PTS beta-glucoside transporter subunit IIABC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
IO98_02490
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.690
IO98_03370
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_12085
Amino acid:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_20620
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.687
IO98_16455
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
IO98_02735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
IO98_04985
PTS glucose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.652
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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