STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO98_22475Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)    
Predicted Functional Partners:
IO98_22470
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.932
IO98_18465
gltD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.900
IO98_01995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.835
IO98_09185
Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
IO98_09195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.752
IO98_22485
Glucose-inhibited division protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.708
IO98_22460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.679
IO98_22465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.623
IO98_20860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.533
IO98_03760
Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.506
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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