Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
IO98_22945Choloylglycine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)    
Predicted Functional Partners:
IO98_22950
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.917
IO98_00765
Prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
IO98_22095
Molecular chaperone Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
IO98_22890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
IO98_03430
Abortive phage infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
IO98_22940
Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.522
IO98_02945
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.471
IO98_02985
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.471
IO98_22955
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
IO98_22960
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
Your Current Organism:
Clostridium celerecrescens
NCBI taxonomy Id: 29354
Other names: ATCC 49205, CECT 954, Clostridium celericrescens, DSM 5628, [. celerecrescens, [Clostridium] celerecrescens, strain 18A
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