STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET08031.1Peptidase family M23. (262 aa)    
Predicted Functional Partners:
SET63399.1
LysM domain-containing protein.
  
 
  0.798
SES87430.1
Stage III sporulation protein AH.
  
  
 0.743
SES83695.1
Stage II sporulation protein P.
  
     0.735
SES87019.1
Stage III sporulation protein AC.
  
     0.711
SES62912.1
Flagellar motor switch protein FliN/FliY.
   
   0.681
SET29390.1
Nucleoid-associated protein YgaU, contains BON and LysM domains.
  
 
  0.678
SET47941.1
Hypothetical protein.
  
 
   0.677
SES98590.1
Similar to stage IV sporulation protein.
  
     0.649
SES69863.1
Subtilase family protein.
  
    0.646
SES98604.1
Sporulation protein YqfC.
  
     0.640
Your Current Organism:
Clostridium polysaccharolyticum
NCBI taxonomy Id: 29364
Other names: ATCC 33142, Fusobacterium polysaccharolyticum, [. polysaccharolyticum, [Clostridium] polysaccharolyticum, strain B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.