STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET21904.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (439 aa)    
Predicted Functional Partners:
SET21925.1
4Fe-4S single cluster domain-containing protein.
 
    0.880
SET21884.1
UDP-glucose 4-epimerase.
 
  
  0.787
SES92508.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
     0.775
SET34600.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
     0.775
SET34772.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
     0.679
SET21948.1
Hypothetical protein.
       0.675
SET21960.1
Radical SAM superfamily protein.
       0.577
SET21982.1
2,4-dienoyl-CoA reductase.
  
    0.547
SES64092.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
  
    0.525
SES91396.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
  
    0.521
Your Current Organism:
Clostridium polysaccharolyticum
NCBI taxonomy Id: 29364
Other names: ATCC 33142, Fusobacterium polysaccharolyticum, [. polysaccharolyticum, [Clostridium] polysaccharolyticum, strain B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.